Régis Pomès: search on Z-Library

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1

Computational approaches to the rational design of nanoemulsions, polymeric micelles, and dendrimers for drug delivery

Loan Huynh, Chris Neale, Régis Pomès, Christine Allen

Journal:

Nanomedicine: Nanotechnology, Biology and Medicine

Year:

2012

Language:

english

File:

PDF, 1.47 MB

english, 2012

2

Structure and Dynamics of Extracellular Loops in Human Aquaporin-1 from Solid-State NMR and Molecular Dynamics

Wang, Shenlin, Ing, Christopher, Emami, Sanaz, Jiang, Yunjiang, Liang, Hongjun, Pomès, Régis, Brown, Leonid S., Ladizhansky, Vladimir

Journal:

Journal of Physical Chemistry B

Year:

2016

Language:

english

File:

PDF, 3.71 MB

english, 2016

3

Structural Determinants of Proton Blockage in Aquaporins

Nilmadhab Chakrabarti, Benoît Roux, Régis Pomès

Journal:

Journal of Molecular Biology

Year:

2004

Language:

english

File:

PDF, 570 KB

english, 2004

4

Molecular basis of proton uptake in single and double mutants of cytochrome c oxidase

Henry, Rowan M, Caplan, David, Fadda, Elisa, Pomès, Régis

Journal:

Journal of Physics Condensed Matter

Year:

2011

Language:

english

File:

PDF, 819 KB

english, 2011

5

Enhancing the accuracy, the efficiency and the scope of free energy simulations

Tomas Rodinger, Régis Pomès

Journal:

Current Opinion in Structural Biology

Year:

2005

Language:

english

File:

PDF, 136 KB

english, 2005

6

Acidity of a Cu-Bound Histidine in the Binuclear Center of Cytochrome c Oxidase

Fadda, Elisa, Chakrabarti, Nilmadhab, Pomès, Régis

Journal:

Journal of Physical Chemistry B

Year:

2005

Language:

english

File:

PDF, 473 KB

english, 2005

7

The Conformational Ensemble of the β-Casein Phosphopeptide Reveals Two Independent Intrinsically Disordered Segments

Naqvi, Muhammad Ali, Rauscher, Sarah, Pomès, Régis, Rousseau, Dérick

Journal:

Year:

2014

Language:

english

File:

PDF, 2.62 MB

english, 2014

8

Reply to “Comment on Acidity of a Cu-bound Histidine in the Binuclear Center of Cytochrome c Oxidase”

Fadda, Elisa, Chakrabarti, Nilmadhab, Pomès, Régis

Journal:

Journal of Physical Chemistry B

Year:

2006

Language:

english

File:

PDF, 15 KB

english, 2006

9

Role of Liquid–Liquid Phase Separation in Assembly of Elastin and Other Extracellular Matrix Proteins

Muiznieks, Lisa D., Sharpe, Simon, Pomès, Régis, Keeley, Fred W.

Journal:

Journal of Molecular Biology

Year:

2018

Language:

english

File:

PDF, 5.89 MB

english, 2018

10

The Structure of the β-Casein Phosphopeptide Consists of Two Independent Intrinsically Disordered Domains

Naqvi, Muhammad A., Rauscher, Sarah, Pomès, Régis, Rousseau, Dérick

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 44 KB

english, 2014

11

Solvent Effects on the Self-Assembly and Mechanical Properties of Elastin-Like Peptides

Srivastava, Ananya, Xue, Zhuyi, Muiznieks, Lisa D., Keeley, Fred W., Pomes, Regis

Journal:

Biophysical Journal

Year:

2019

Language:

english

File:

PDF, 44 KB

english, 2019

12

Substrate-based Allosteric Regulation of a Homodimeric Enzyme

Mehrabi, Pedram, Di Pietrantonio, Christopher, Kim, Tae Hun, Sljoka, Adnan, TAVERNER, KEITH, Ing, Christopher, Kruglyak, Natasha, Pomès, Régis, Pai, Emil F., Prosser, Robert Scott

Journal:

Journal of the American Chemical Society

Year:

2019

File:

PDF, 5.77 MB

2019

13

Systematic Study of Anharmonic Features in a Principal Component Analysis of Gramicidin A

Kurylowicz, Martin, Yu, Ching-Hsing, Pomès, Régis

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 1.16 MB

english, 2010

14

Coupling of Channel Fluctuations in Ion Permeation and Selectivity in Bacterial Sodium Channel NavAb

Ing, Christopher, Chakrabarti, Nilmadhab, Zheng, Ning, Catterall, William A., Pomès, Régis

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 43 KB

english, 2015

15

Theoretical Studies of the Grotthuss Mechanism in Biological Proton Wires

Journal:

Israel Journal of Chemistry

Year:

1999

Language:

english

File:

PDF, 852 KB

english, 1999

16

Free Energy Profiles for H+ Conduction along Hydrogen-Bonded Chains of Water Molecules

Pomès, Régis, Roux, Benoît

Journal:

Biophysical Journal

Year:

1998

Language:

english

File:

PDF, 237 KB

english, 1998

17

Specific Protein-Lipid Interactions Stabilize an Active State of the Beta 2 Adrenergic Receptor

Neale, Chris, Herce, Henry D., Pomès, Régis, García, Angel E.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 43 KB

english, 2015

18

Solution NMR structure of yeast Rcf1, a protein involved in respiratory supercomplex formation

Zhou, Shu, Pettersson, Pontus, Huang, Jingjing, Sjöholm, Johannes, Sjöstrand, Dan, Pomès, Régis, Högbom, Martin, Brzezinski, Peter, Mäler, Lena, Ädelroth, Pia

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 1.69 MB

english, 2018

19

Extracting Non-Gaussian Modes of Motion from the Principal Components of Gramicidin A

Kurylowicz, Martin, Pomé, Régis

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 90 KB

english, 2009

20

Role of Channel Fluctuations in Ion Transport and Selectivity in Bacterial Sodium Channel NavAb

Ing, Christopher, Chakrabarti, Nilmadhab, Zheng, Ning, Catterall, William A., Pomès, Régis

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 47 KB

english, 2017

21

Mapping the functional anatomy of Orai1 transmembrane domains for CRAC channel gating

Yeung, Priscilla S.-W., Yamashita, Megumi, Ing, Christopher E., Pomès, Régis, Freymann, Douglas M., Prakriya, Murali

Journal:

Proceedings of the National Academy of Sciences

Year:

2018

Language:

english

File:

PDF, 2.59 MB

english, 2018

22

Helix-Helix Contacts between the ORAI1 Pore Segment and the TM2/3 Ring Regulates STIM1-Mediated CRAC Channel Activation

Yeung, Priscilla S.-W., Yamashita, Megumi, Ing, Christopher E., Pomès, Régis, Freymann, Douglas M., Prakriya, Murali

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 46 KB

english, 2018

23

A Heterogeneous, Purpose Built Computer Architecture for Accelerating Biomolecular Simulation

Madill, Christopher A., Patel, Arun, Saldaña, Manuel, Chow, Paul, Pomès, Régis

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 36 KB

english, 2011

24

Systematic design of unimolecular star copolymer micelles using molecular dynamics simulations

Huynh, Loan, Neale, Chris, Pomès, Régis, Allen, Christine

Journal:

Year:

2010

Language:

english

File:

PDF, 417 KB

english, 2010

25

Hydrophobic Gating of Ion Permeation in Magnesium Channel CorA

Neale, Chris, Chakrabarti, Nilmadhab, Pomorski, Pawel, Pai, Emil F., Pomès, Régis, Tajkhorshid, Emad

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 3.19 MB

english, 2015

26

Is the Hydrophobic Gasket a Secondary Selectivity Filter in the Human Voltage Gated Proton Channel HHV1?

Banh, Richard, Kulleperuma, Kethika, Cherny, Vladimir V., Morgan, Deri, Musset, Boris, Thomas, Sarah, Smith, Susan M.E., Pomès, Régis, DeCoursey, Thomas E.

Journal:

Biophysical Journal

Year:

2019

File:

PDF, 44 KB

2019

27

A Homology Modeling-Simulation Protocol for Construction and Assessment of Hv1 Models

Kulleperuma, Kethika, Smith, Susan M.E., Holyoake, John, Chakrabarti, Nilmadhab, Morgan, Deri, Musset, Boris, DeCoursey, Thomas E., Cherny, Vladimir V., Pomès, Régis

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 69 KB

english, 2012

28

Quantum effects on the structure and energy of a protonated linear chain of hydrogen-bonded water molecules

Régis Pomès, Benoît Roux

Journal:

Chemical Physics Letters

Year:

1995

Language:

english

File:

PDF, 646 KB

english, 1995

29

Equilibrium exchange enhances the convergence rate of umbrella sampling

Chris Neale, Tomas Rodinger, Régis Pomès

Journal:

Chemical Physics Letters

Year:

2008

Language:

english

File:

PDF, 1.61 MB

english, 2008

30

Deriving Transferable Parameters for the Coarse-Grained Martini Model: Application to Amyloid-Like and Elastin-Like Peptides

Seo, Mikyung, Rauscher, Sarah, Pomès, Régis, Tieleman, D. Peter

Journal:

Biophysical Journal

Year:

2012

Language:

english

File:

PDF, 38 KB

english, 2012

31

Detergent-mediated protein aggregation

Neale, Chris, Ghanei, Hamed, Holyoake, John, Bishop, Russell E., Privé, Gilbert G., Pomès, Régis

Journal:

Chemistry and Physics of Lipids

Year:

2013

Language:

english

File:

PDF, 2.35 MB

english, 2013

32

Molecular Mechanism of Inhibition of Amyloid Formation by Inositol

Li, Grace, Pomès, Régis

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 47 KB

english, 2010

33

Accelerating Convergence in Molecular Dynamics Simulations of Solutes in Lipid Membranes by Conducting a Random Walk along the Bilayer Normal

Neale, Chris, Madill, Chris, Rauscher, Sarah, Pomès, Régis

Journal:

Journal of Chemical Theory and Computation

Year:

2013

Language:

english

File:

PDF, 1.48 MB

english, 2013

34

A general and Efficient All-Atom Simulation Method to Determine the Equilibrium Orientation of Transmembrane Proteins in Membranes

Kulleperuma, Kethika, Holyoake, John, Pomès, Régis

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 35 KB

english, 2011

35

The Intrinsically Unstable SH3-DRKN Protein: Compactness, Conformations and Speed

Gradinaru, Claudiu, Mazouchi, Amir, Rauscher, Sarah, Pomes, Regis, Forman-Kay, Julie

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 49 KB

english, 2013

36

Peptide Bond Isomerization in High-Temperature Simulations

Neale, Chris, Pomès, Régis, Garcia, Angel E

Journal:

Journal of Chemical Theory and Computation

Year:

2016

Language:

english

File:

PDF, 2.15 MB

english, 2016

37

Controlling the Biophysical Properties and Functionality of Phase-Separated Elastin-Based Droplets through Amino Acid Sequence Mutations

Muiznieks, Lisa D., Keeley, Fred W., Pomès, Régis

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 63 KB

english, 2017

38

Structure and dynamics of a proton shuttle in cytochrome c oxidase

Régis Pomès, Gerhard Hummer, Mårten Wikström

Journal:

Biochimica et Biophysica Acta (BBA) - Bioenergetics

Year:

1998

Language:

english

File:

PDF, 487 KB

english, 1998

39

Molecular Mechanism of H+ Conduction in the Single-File Water Chain of the Gramicidin Channel

Pomès, Régis, Roux, Benoît

Journal:

Biophysical Journal

Year:

2002

Language:

english

File:

PDF, 411 KB

english, 2002

40

An Iris-Like Mechanism of Pore Dilation in the CorA Magnesium Transport System

Chakrabarti, Nilmadhab, Neale, Chris, Payandeh, Jian, Pai, Emil F., Pomès, Régis

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 1.89 MB

english, 2010

41

Molecular Mechanism of Aβ Amyloid Inhibition by Inositol

Li, Grace, Pomès, Régis

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 105 KB

english, 2011

42

Iris-Like Mechanism of Pore Dilation in the CorA Magnesium Transport System

Chakrabarti, Nilmadhab, Neale, Chris, Payandeh, Jian, Pai, Emil F., Pomès, Régis

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 43 KB

english, 2010

43

Theoretical Study of H + Translocation along a Model Proton Wire

Pomès, Régis, Roux, Benoît

Journal:

Journal of Physical Chemistry

Year:

1996

Language:

english

File:

PDF, 598 KB

english, 1996

44

Global Contacts Direct Hydophobic Collapse in Protein Folding

Huynh, Loan K., Neale, Chris, Pomès, Régis, Chan, Hue Sun

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 39 KB

english, 2015

45

STIM1 activates CRAC channels through rotation of the pore helix to open a hydrophobic gate

Yamashita, Megumi, Yeung, Priscilla S.-W., Ing, Christopher E., McNally, Beth A., Pomès, Régis, Prakriya, Murali

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.44 MB

english, 2017

46

Molecular Mechanisms of Ion Permeation, Selectivity, and Leakage

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 43 KB

english, 2018

47

Indolicidin Binding Induces Thinning of a Lipid Bilayer

Neale, Chris, Hsu, Jenny C.Y., Yip, Christopher M., Pomès, Régis

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 832 KB

english, 2014

48

Structural basis for gating pore current in periodic paralysis

Jiang, Daohua, Gamal El-Din, Tamer M., Ing, Christopher, Lu, Peilong, Pomès, Régis, Zheng, Ning, Catterall, William A.

Journal:

Year:

2018

Language:

english

File:

PDF, 7.79 MB

english, 2018

49

PagP Crystallized from SDS/Cosolvent Reveals the Route for Phospholipid Access to the Hydrocarbon Ruler

Jose Antonio Cuesta-Seijo, Chris Neale, M. Adil Khan, Joel Moktar, Christopher D. Tran, Russell E. Bishop, Régis Pomès, Gilbert G. Privé

Journal:

Year:

2010

Language:

english

File:

PDF, 1.11 MB

english, 2010

50

Solvation and Binding of the Membrane Enzyme Pagp By Detergents and Lipids

Neale, Chris, Pomès, Régis

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 36 KB

english, 2010

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